STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gtrAPutative bactoprenol-linked glucose translocase. (135 aa)    
Predicted Functional Partners:
BAV2925
Putative exported protein.
 
     0.877
BAV0388
Hypothetical protein.
  
     0.664
BAV2945
Putative transcriptional regulator; Start codon not provided.
  
   
 0.550
BAV3379
Putative membrane protein.
  
     0.538
BAV1804
Putative lipoprotein; No significant database matches.
 
     0.535
BAV1280
Putative phage integrase; Belongs to the 'phage' integrase family.
  
     0.532
gspN
General secretion pathway protein N.
  
     0.519
BAV0253
Putative transcriptional regulator; Start codon not provided.
  
   
 0.504
BAV0017
Putative peptidoglycan binding protein.
  
     0.458
pagP
Lipid A palmitoyl transferase; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.
  
     0.450
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.