STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAV2971Putative exported solute binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (359 aa)    
Predicted Functional Partners:
BAV2258
TRAP-family transport system, substrate-binding transport protein.
  
 
0.917
BAV1580
Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 
0.906
BAV1578
Putative C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter, permease component.
 
  
 0.830
BAV1579
Putative C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter, permease component.
 
  
 0.824
BAV2972
Hypothetical protein; No significant database matches.
       0.541
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.430
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.424
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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