STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2976Putative acetyltransferase. (828 aa)    
Predicted Functional Partners:
glpR
Glycerol-3-phosphate regulon repressor.
    
   0.710
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.698
BAV2981
Putative oxidoreductase; Also similar to BAV3062 (48.1 38d.).
 
 
 
 0.683
BAV3062
Putative oxidoreductase; Also similar to BAV2981 (48.1 38d.).
 
 
 
 0.683
wlbJK
Putative membrane protein.
  
 
 0.661
BAV1363
Histone deacetylase family protein.
 
     0.653
bvgS
Virulence sensor protein; Start codon not provided.
  
 
 0.566
maeB1
NADP-dependent malic enzyme.
     
 0.530
maeB
NADP-dependent malic enzyme.
     
 0.530
maeB2
NADP-dependent malic enzyme.
     
 0.530
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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