STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2981Putative oxidoreductase; Also similar to BAV3062 (48.1 38d.). (1159 aa)    
Predicted Functional Partners:
fdsA
NAD-dependent formate dehydrogenase alpha subunit.
   
 
 0.772
BAV3062
Putative oxidoreductase; Also similar to BAV2981 (48.1 38d.).
  
 
 0.760
gltD
Glutamate synthase [NADPH] small chain.
   
 
 0.759
fdsG
NAD-dependent formate dehydrogenase gamma subunit.
   
 
 0.728
nuoE
NADH dehydrogenase I chain E.
   
 
 0.728
fumA
Putative fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.613
BAV2367
Probable hydroxylase.
  
  
 0.594
paaK
Phenylacetate-coenzyme A ligase.
 
  
 0.593
maeB1
NADP-dependent malic enzyme.
     
 0.581
maeB
NADP-dependent malic enzyme.
     
 0.581
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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