STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dltAPutative D-alanine-D-alanyl carrier protein ligase. (478 aa)    
Predicted Functional Partners:
dltB
Putative D-alanine transferase.
 
  
  0.992
BAV2991
Acyl carrier protein.
  
 0.976
dltD
Putative D-alanine transferase.
 
 
  0.966
dadX
Alanine racemase, catabolic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.907
dat
D-alanine aminotransferase.
  
 
 0.904
ddlB
D-alanine--D-alanine ligase; Cell wall formation.
     
 0.902
BAV1171
Putative acetyl-CoA synthetase.
 0.870
BAV2519
Probable short-chain dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.830
BAV0978
Putative substrate-CoA ligase.
 
     0.787
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
 
  
 0.782
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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