STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3003Putative membrane protein; Start codon not provided. (290 aa)    
Predicted Functional Partners:
exbB2
Biopolymer transport protein.
 
 
 0.892
exbD2
Biopolymer transport protein.
 
 
 0.861
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
  
 0.826
exbD1
Biopolymer transport protein.
  
 
 0.777
tolR
TolR protein.
  
 
 0.777
BAV2994
Putative membrane protein.
 
     0.771
BAV2266
Putative membrane protein.
  
     0.765
bfeA
Ferric enterobactin receptor.
 
 
 0.756
btuB
TonB-dependent vitamin B12 receptor; Start codon not provided.
 
 
 
 0.749
BAV3362
Putative exported protein.
 
     0.713
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.