STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3003Putative membrane protein; Start codon not provided. (290 aa)    
Predicted Functional Partners:
exbB2
Biopolymer transport protein.
 
 
 0.892
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
    0.836
exbD2
Biopolymer transport protein.
 
 
 0.835
BAV2994
Putative membrane protein.
 
     0.771
BAV2266
Putative membrane protein.
  
     0.765
bfeA
Ferric enterobactin receptor.
 
 
 0.764
exbD1
Biopolymer transport protein.
  
 
 0.734
tolR
TolR protein.
  
 
 0.734
BAV3362
Putative exported protein.
 
     0.712
BAV3002
Putative ribonuclease.
  
    0.671
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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