STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rubRubredoxin. (54 aa)    
Predicted Functional Partners:
BAV3012
Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family.
  
    0.763
BAV0660
Putative ferredoxin reductase.
  
 
 0.719
BAV2072
Putative ferredoxin reductase.
  
 
 0.719
BAV3008
Putative phospholipid/glycerol acyltransferase.
     
 0.717
yqgF
Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
    0.687
BAV0262
Putative bifunctional protein: include phospholipase and oxidoreductase.
  
 
 0.680
thiE
Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
  
    0.658
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
     
 0.653
thiD
Phosphomethylpyrimidine kinase; Start codon not provided.
  
    0.646
pyrC-2
Dihydroorotase; Start codon not provided.
  
    0.633
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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