STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV3017Conserved hypothetical protein. (543 aa)    
Predicted Functional Partners:
BAV2055
Hypothetical protein; No significant database matches. Seems to be unique to the Bordetellae.
   
    0.705
waaC
Lipopolysaccharide heptosyltransferase-1.
   
    0.533
cphA2
Cyanophycin synthetase; Also similar to BAV1232, 45.316 38dentity (46.292 ungapped) in 854 aa overlap.
 
     0.501
cphA1
Cyanophycin synthetase; Also similar to BAV1233, 45.316 38dentity (46.292 ungapped) in 854 aa overlap; Belongs to the MurCDEF family.
 
     0.499
BAV2171
Conserved hypothetical protein; Start codon not provided.
  
     0.499
BAV3028
Putative sensor kinase.
 
     0.447
thiD
Phosphomethylpyrimidine kinase; Start codon not provided.
       0.434
thiE
Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
       0.434
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
       0.434
fliN
Flagellar motor switch protein.
 
     0.425
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.