STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV3079Putative O-acyltransferase. (215 aa)    
Predicted Functional Partners:
BAV3081
Putative glycosyl transferase.
  
 
 0.882
BAV3077
Putative exopolysaccharide biosynthesis aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
   
 0.812
BAV3084
Putative 3-oxoacyl-[acyl-carrier-protein] synthase; Start codon not provided.
  
 
 0.810
BAV3087
Putative O-antigen export ABC transporter,putative permease protein.
 
     0.809
BAV3080
Putative dioxygenase.
 
     0.805
BAV3078
Putative exopolysaccharide biosynthesis glycosyl transferase.
     
 0.786
BAV3085
Acyl carrier protein; Start codon not provided.
  
  
 0.783
lpxB
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
  
 0.780
BAV3086
Putative O-antigen export ABC transporter,ATP-binding protein.
       0.778
BAV3082
Putative short-chain dehydrogenase/reductase.
   
 
 0.777
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.