STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3080Putative dioxygenase. (382 aa)    
Predicted Functional Partners:
BAV3084
Putative 3-oxoacyl-[acyl-carrier-protein] synthase; Start codon not provided.
 
     0.807
BAV3079
Putative O-acyltransferase.
 
     0.805
BAV3077
Putative exopolysaccharide biosynthesis aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
       0.780
BAV3078
Putative exopolysaccharide biosynthesis glycosyl transferase.
       0.780
BAV3081
Putative glycosyl transferase.
       0.780
BAV3082
Putative short-chain dehydrogenase/reductase.
       0.780
BAV3085
Acyl carrier protein; Start codon not provided.
     
 0.780
BAV3086
Putative O-antigen export ABC transporter,ATP-binding protein.
       0.775
BAV3087
Putative O-antigen export ABC transporter,putative permease protein.
       0.775
BAV3083
Putative short-chain dehydrogenase/reductase.
       0.773
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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