STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3100Probable FAD-linked oxidase. (1320 aa)    
Predicted Functional Partners:
BAV3099
GntR-family transcriptional regulator.
       0.689
BAV2710
Conserved hypothetical protein.
  
     0.674
BAV1056
Putative membrane protein.
  
     0.673
BAV0068
Putative C-type cytochrome bigenesis protein.
  
     0.666
BAV2367
Probable hydroxylase.
 
 
 0.662
lpdA
Dihydrolipoamide dehydrogenase.
 
 
 0.632
BAV0069
Putative cytochrome c biogenesis protein.
 
  
 0.630
gltB
Glutamate synthase [NADPH] large chain precursor.
     
 0.617
cysG
Siroheme synthase includes: uroporphyrin-iii c-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
     
 0.603
glpD
Glycerol-3-phosphate dehydrogenase.
  
  
 0.603
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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