STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bhuSPutative heme degradase. (348 aa)    
Predicted Functional Partners:
bhuT
Hemin ABC transporter, substrate-binding protein.
 
  
 0.998
bhuV
Hemin ABC transporter, ATP-binding protein; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
   
 0.989
bhuU
Hemin ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.983
bhuR
Outer membrane TonB-dependent heme receptor.
 
  
 0.820
BAV2654
Putative iron ABC transporter, ATP-binding protein.
 
      0.635
BAV2181
Conserved hypothetical protein.
  
     0.565
hurI
Heme uptake RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.530
gltB
Glutamate synthase [NADPH] large chain precursor.
       0.514
hemC-2
Putative TonB-dependent heme receptor.
 
  
 0.486
hurR
Heme uptake transmembrane sensor.
  
  
 0.482
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.