STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV3139Putative membrane protein. (329 aa)    
Predicted Functional Partners:
BAV3137
Putative exported protein.
 
     0.953
BAV3138
Putative exported polysaccharide deacetylase.
 
     0.953
BAV2417
Phytoene synthase.
  
 
 0.542
BAV2418
Phytoene synthase.
  
 
 0.542
BAV0292
Putative metallo-phosphoesterase.
  
     0.529
BAV3282
Putative NUDIX hydrolase.
  
  
 0.499
BAV3126
Putative monooxygenase.
  
 
 0.469
BAV1526
Putative membrane protein.
  
     0.457
BAV3024
2-amninobenzoyl-CoA monooxygenase/reductase.
   
 
 0.440
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
    
   0.409
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.