STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
fdnGFormate dehydrogenase, major subunit; The active-site selenocysteine, residue 197, is encoded by an opal stop codon. (1021 aa)    
Predicted Functional Partners:
fdnH
Nformate dehydrogenase, iron-sulfur subunit.
 
 0.999
fdnI
Formate dehydrogenase, cytochrome b556.
 
 0.998
fdhE
Formate dehydrogenase formation protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
 
 
 0.943
fdsB
NAD-dependent formate dehydrogenase beta subunit.
  
 0.936
fdsG
NAD-dependent formate dehydrogenase gamma subunit.
   
 0.936
selA
selenocysteinyl-tRNA(SeC) synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.923
fdsA
NAD-dependent formate dehydrogenase alpha subunit.
 
 
0.922
selB
Selenocysteine-specific elongation factor.
 
   
 0.920
fdsD
NAD-dependent formate dehydrogenase delta subunit.
     
 0.903
fmdA
Formamidase.
     
 0.903
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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