STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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selAselenocysteinyl-tRNA(SeC) synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (467 aa)    
Predicted Functional Partners:
selD
Selenide,water dikinase (TCA); Synthesizes selenophosphate from selenide and ATP.
 
  
 0.992
selB
Selenocysteine-specific elongation factor.
 
  
 0.981
fdhE
Formate dehydrogenase formation protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
   
 0.959
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.931
fdnG
Formate dehydrogenase, major subunit; The active-site selenocysteine, residue 197, is encoded by an opal stop codon.
 
  
 0.923
fdnH
Nformate dehydrogenase, iron-sulfur subunit.
 
  
 0.923
fdnI
Formate dehydrogenase, cytochrome b556.
 
  
 0.903
trkA
Trk system potassium uptake protein.
   
    0.466
kch
Putative potassium channel protein.
   
    0.466
fdsC
Formate dehydrogenase associated protein; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
  
 0.400
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.