STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3194Putative CoA-transferase; Belongs to the CoA-transferase III family. (408 aa)    
Predicted Functional Partners:
gcdH
glutaryl-CoA dehydrogenase.
 
 0.954
csiD
Carbon starvation-inducible protein.
     
 0.902
sucB
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
     
 0.901
BAV0042
Putative aldehyde dehydrogenase.
    
  0.900
gabD
Succinate-semialdehyde dehydrogenase [NADP+].
    
  0.900
gabD-2
Succinate-semialdehyde dehydrogenase [NADP+]; Belongs to the aldehyde dehydrogenase family.
    
  0.900
dcaH
hydroxyacyl-CoA dehydrogenase.
     
 0.673
dcaA
acyl-CoA dehydrogenase.
  
 
 0.622
BAV3196
TetR-family trasncriptional regulator.
  
    0.520
dcaE
enoyl-CoA hydratase.
  
 
 0.492
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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