STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcaEenoyl-CoA hydratase. (244 aa)    
Predicted Functional Partners:
dcaA
acyl-CoA dehydrogenase.
 
 0.900
BAV3197
Putative 2-nitropropane dioxygenase.
 
  
 0.865
BAV1367
Probable acyl-CoA dehydrogenase.
 
 0.802
BAV0610
acyl-CoA dehydrogenase.
 
 0.801
BAV0226
acyl-CoA dehydrogenase.
 
 0.796
BAV3021
acyl-CoA dehydrogenase.
 
 0.791
BAV1758
acyl-CoA dehydrogenase; Start codon not provided.
 
 0.785
gcdH
glutaryl-CoA dehydrogenase.
  
 0.751
dcaH
hydroxyacyl-CoA dehydrogenase.
 
 0.747
wlbJK
Putative membrane protein.
  
 0.687
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.