STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3224Putative thioredoxin reductase. (295 aa)    
Predicted Functional Partners:
BAV1625
Putative thioredoxin.
 
 
 0.706
folB
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.664
ahpC
Alkyl hydroperoxide reductase.
  
 
 0.601
BAV1368
Antioxidant protein.
  
 
 0.601
trxA
Also similar to BAV1986 (40.000 38d.); Belongs to the thioredoxin family.
  
 
 0.583
ttcA
Conserved hypothetical protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.
     
 0.575
trxC
Also similar to BAV2379 (40.000 38d.); Belongs to the thioredoxin family.
  
 
 0.559
dltD
Putative D-alanine transferase.
  
     0.537
BAV2248
Conserved hypothetical protein.
 
 
   0.528
thiF
Adenylyltransferase.
  
    0.526
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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