STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3237Hypothetical protein; No significant database matches. (87 aa)    
Predicted Functional Partners:
BAV3236
Conserved hypothetical protein; Belongs to the UPF0178 family.
 
     0.819
BAV2156
Putative exported protein.
  
     0.719
BAV2871
Conserved hypothetical protein.
  
     0.712
BAV0861
Putative ribonuclease inhibitor.
  
     0.656
rseA
sigma-E factor negative regulatory protein.
  
     0.643
BAV2516
Conserved hypothetical protein.
  
     0.641
BAV1356
Putative membrane protein.
  
     0.627
BAV2758
Putative membrane protein.
  
     0.615
BAV1186
Conserved hypothetical protein.
  
     0.614
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.609
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.