STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csiDCarbon starvation-inducible protein. (305 aa)    
Predicted Functional Partners:
BAV0042
Putative aldehyde dehydrogenase.
   
 
  0.905
gabD
Succinate-semialdehyde dehydrogenase [NADP+].
   
 
  0.905
gabD-2
Succinate-semialdehyde dehydrogenase [NADP+]; Belongs to the aldehyde dehydrogenase family.
   
 
  0.905
BAV3194
Putative CoA-transferase; Belongs to the CoA-transferase III family.
     
 0.902
BAV2821
Putative oxidase.
  
  
 0.816
BAV3239
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.610
BAV2026
Probable esterase.
  
     0.600
BAV3379
Putative membrane protein.
  
     0.591
BAV0388
Hypothetical protein.
  
     0.541
mqo
Malate:quinone oxidoreductase.
  
  
 0.443
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.