BAV3244 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAV3244

Conserved hypothetical protein. (302 aa)

Predicted Functional Partners:

ppk

0.786

BAV3243

0.776

BAV2438

0.616

BAV3245

0.589

ppx

0.519

ompW

0.467

hemN

0.411

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV2438	BAV3244	BAV2438	BAV3244	Conserved hypothetical protein.	Conserved hypothetical protein.	0.616
BAV2438	hemN	BAV2438	BAV1391	Conserved hypothetical protein.	Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.612
BAV2438	ompW	BAV2438	BAV3303	Conserved hypothetical protein.	Outer membrane protein.	0.452
BAV3243	BAV3244	BAV3243	BAV3244	Putative transporter.	Conserved hypothetical protein.	0.776
BAV3243	BAV3245	BAV3243	BAV3245	Putative transporter.	Plasma membrane-type ATPase; Start codon not provided; Also similar to BAV2768 (27.7 38d). Seems to be more similar to eukaryotic plasma membrane ATPase.	0.600
BAV3244	BAV2438	BAV3244	BAV2438	Conserved hypothetical protein.	Conserved hypothetical protein.	0.616
BAV3244	BAV3243	BAV3244	BAV3243	Conserved hypothetical protein.	Putative transporter.	0.776
BAV3244	BAV3245	BAV3244	BAV3245	Conserved hypothetical protein.	Plasma membrane-type ATPase; Start codon not provided; Also similar to BAV2768 (27.7 38d). Seems to be more similar to eukaryotic plasma membrane ATPase.	0.589
BAV3244	hemN	BAV3244	BAV1391	Conserved hypothetical protein.	Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.411
BAV3244	ompW	BAV3244	BAV3303	Conserved hypothetical protein.	Outer membrane protein.	0.467
BAV3244	ppk	BAV3244	BAV0936	Conserved hypothetical protein.	Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.	0.786
BAV3244	ppx	BAV3244	BAV0935	Conserved hypothetical protein.	Exopolyphosphatase.	0.519
BAV3245	BAV3243	BAV3245	BAV3243	Plasma membrane-type ATPase; Start codon not provided; Also similar to BAV2768 (27.7 38d). Seems to be more similar to eukaryotic plasma membrane ATPase.	Putative transporter.	0.600
BAV3245	BAV3244	BAV3245	BAV3244	Plasma membrane-type ATPase; Start codon not provided; Also similar to BAV2768 (27.7 38d). Seems to be more similar to eukaryotic plasma membrane ATPase.	Conserved hypothetical protein.	0.589
hemN	BAV2438	BAV1391	BAV2438	Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Conserved hypothetical protein.	0.612
hemN	BAV3244	BAV1391	BAV3244	Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Conserved hypothetical protein.	0.411
hemN	ompW	BAV1391	BAV3303	Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Outer membrane protein.	0.869
ompW	BAV2438	BAV3303	BAV2438	Outer membrane protein.	Conserved hypothetical protein.	0.452
ompW	BAV3244	BAV3303	BAV3244	Outer membrane protein.	Conserved hypothetical protein.	0.467
ompW	hemN	BAV3303	BAV1391	Outer membrane protein.	Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.869