STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3248Putative gluconate dehydrogenase subunit. (588 aa)    
Predicted Functional Partners:
BAV3249
Putative gluconate dehydrogenase subunit.
 0.998
BAV3247
Putative cytochrome C subunit of gluconate dehydrogenase.
 
 
 0.960
adhB
Alcohol dehydrogenase cytochrome c subunit.
 
 
 0.847
BAV3403
Putative dehydrogenase, cytochrome C subunit.
 
 
 0.829
BAV1534
Putative bifunctional protein,oxidoreductase/cytochrome subunits.
 
 
 
 0.814
BAV1835
Putative lipoprotein.
    
 0.560
BAV1806
Cytochrome c family protein.
   
 
 0.523
BAV0444
Ankyrin repeat-containing exported protein.
  
 
 0.462
wssC1
Cyclic di-GMP binding protein (cellulose synthase regulatory subunit); Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
 
 0.459
gltB
Glutamate synthase [NADPH] large chain precursor.
     
 0.411
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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