STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3256Putative chorismatase hydrolase. (202 aa)    
Predicted Functional Partners:
BAV1528
Probable hydrolase.
  
     0.749
BAV2741
Putative isochorismatase-family hydrolase.
  
     0.747
BAV3255
Putative racemase.
 
     0.733
BAV0627
Putative isochorismatase hydrolase.
  
     0.716
BAV3254
Putative reductase flavoprotein subunit; Also similar to BAV0956 (29.2 38d); Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
    0.708
BAV3257
Putative N-acylmannosamine 1-dehydrogenase (short-chain dehydrogenase/reductase).
   
   0.650
BAV3258
Putative dehydrogenase; Similarity to kstd2 is limited to the C-terminus.
 
    0.552
BAV1532
Putative salicylate hydroxylase; Start codon not provided.
 
  
 0.442
BAV3260
Conserved hypothetical protein; Start codon not provided.
 
     0.403
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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