STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3260Conserved hypothetical protein; Start codon not provided. (473 aa)    
Predicted Functional Partners:
BAV0713
Conserved hypothetical protein.
 
  
 0.677
BAV3261
Putative exported protein.
 
    0.624
BAV3259
Putative exported protein.
  
    0.619
prpC
2-methylcitrate synthase; Belongs to the citrate synthase family.
  
  
 0.590
gltA
Citrate synthase; Belongs to the citrate synthase family.
  
  
 0.590
citE
Citrate lyase beta chain; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.588
BAV0957
Carboxyvinyl-carboxyphosphonate phosphorylmutase.
 
  
 0.569
bcpA
Carboxyvinyl-carboxyphosphonate phosphorylmutase.
 
  
 0.557
BAV0623
Carboxyvinyl-carboxyphosphonate phosphorylmutase.
 
  
 0.544
BAV3258
Putative dehydrogenase; Similarity to kstd2 is limited to the C-terminus.
 
    0.535
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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