STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3282Putative NUDIX hydrolase. (271 aa)    
Predicted Functional Partners:
BAV3139
Putative membrane protein.
  
  
 0.499
ubiH
2-octaprenyl-6-methoxyphenol hydroxylase; Also similar to BAV3230 (29.3 38d).
  
  
 0.481
BAV0861
Putative ribonuclease inhibitor.
  
     0.452
BAV3024
2-amninobenzoyl-CoA monooxygenase/reductase.
  
  
 0.447
BAV0540
Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae.
 
     0.437
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. Belongs to the GHMP kinase family. IspE subfamily.
     
 0.436
pqiB
Putative paraquat-inducible protein B.
  
     0.425
BAV2417
Phytoene synthase.
  
  
 0.410
BAV2418
Phytoene synthase.
  
  
 0.410
BAV2290
Putative pilus assembly protein; No significant database matches.
  
     0.409
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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