BAV3288 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAV3288

Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde. (279 aa)

Predicted Functional Partners:

adhC

0.999

fdsG

0.912

fdsA

0.906

fdsD

0.905

fdsB

0.902

fdnG

0.901

fdnH

0.900

fdnI

0.900

BAV0849

0.833

fmdA

0.800

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV0849	BAV3288	BAV0849	BAV3288	Putative exported protein.	Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.	0.833
BAV3288	BAV0849	BAV3288	BAV0849	Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.	Putative exported protein.	0.833
BAV3288	adhC	BAV3288	BAV3289	Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.	Glutathione-dependent formaldehyde dehydrogenase; Deleted EC_number 1.2.1.1; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.999
BAV3288	fdnG	BAV3288	BAV3142	Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.	Formate dehydrogenase, major subunit; The active-site selenocysteine, residue 197, is encoded by an opal stop codon.	0.901
BAV3288	fdnH	BAV3288	BAV3144	Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.	Nformate dehydrogenase, iron-sulfur subunit.	0.900
BAV3288	fdnI	BAV3288	BAV3145	Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.	Formate dehydrogenase, cytochrome b556.	0.900
BAV3288	fdsA	BAV3288	BAV0816	Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.	NAD-dependent formate dehydrogenase alpha subunit.	0.906
BAV3288	fdsB	BAV3288	BAV0817	Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.	NAD-dependent formate dehydrogenase beta subunit.	0.902
BAV3288	fdsD	BAV3288	BAV0814	Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.	NAD-dependent formate dehydrogenase delta subunit.	0.905
BAV3288	fdsG	BAV3288	BAV0818	Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.	NAD-dependent formate dehydrogenase gamma subunit.	0.912
BAV3288	fmdA	BAV3288	BAV2261	Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.	Formamidase.	0.800
adhC	BAV3288	BAV3289	BAV3288	Glutathione-dependent formaldehyde dehydrogenase; Deleted EC_number 1.2.1.1; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.	0.999
fdnG	BAV3288	BAV3142	BAV3288	Formate dehydrogenase, major subunit; The active-site selenocysteine, residue 197, is encoded by an opal stop codon.	Putative esterase; Serine hydrolase involved in the detoxification of formaldehyde.	0.901
fdnG	fdnH	BAV3142	BAV3144	Formate dehydrogenase, major subunit; The active-site selenocysteine, residue 197, is encoded by an opal stop codon.	Nformate dehydrogenase, iron-sulfur subunit.	0.999
fdnG	fdnI	BAV3142	BAV3145	Formate dehydrogenase, major subunit; The active-site selenocysteine, residue 197, is encoded by an opal stop codon.	Formate dehydrogenase, cytochrome b556.	0.998
fdnG	fdsA	BAV3142	BAV0816	Formate dehydrogenase, major subunit; The active-site selenocysteine, residue 197, is encoded by an opal stop codon.	NAD-dependent formate dehydrogenase alpha subunit.	0.922
fdnG	fdsB	BAV3142	BAV0817	Formate dehydrogenase, major subunit; The active-site selenocysteine, residue 197, is encoded by an opal stop codon.	NAD-dependent formate dehydrogenase beta subunit.	0.911
fdnG	fdsD	BAV3142	BAV0814	Formate dehydrogenase, major subunit; The active-site selenocysteine, residue 197, is encoded by an opal stop codon.	NAD-dependent formate dehydrogenase delta subunit.	0.906
fdnG	fdsG	BAV3142	BAV0818	Formate dehydrogenase, major subunit; The active-site selenocysteine, residue 197, is encoded by an opal stop codon.	NAD-dependent formate dehydrogenase gamma subunit.	0.911
fdnG	fmdA	BAV3142	BAV2261	Formate dehydrogenase, major subunit; The active-site selenocysteine, residue 197, is encoded by an opal stop codon.	Formamidase.	0.903