STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hyuB-2Hydantoin utilization protein B. (588 aa)    
Predicted Functional Partners:
hyuA-2
Hydantoin hydantoinase A.
 0.999
hyuA
Hydantoin utilization protein A.
 0.998
hyuB
Hydantoin utilization protein B.
  
  
 
0.923
codA
Cytosine deaminase.
     
  0.900
BAV3295
AraC-family transcriptional regulator.
 
     0.872
BAV3296
Putative permease.
 
     0.715
gltD
Glutamate synthase [NADPH] small chain.
       0.467
gltB
Glutamate synthase [NADPH] large chain precursor.
       0.464
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.