STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3296Putative permease. (438 aa)    
Predicted Functional Partners:
hyuB-2
Hydantoin utilization protein B.
 
     0.719
BAV3298
Conserved hypothetical protein; Also similar to BAV3096 (28.6 38d).
 
     0.641
hyuA-2
Hydantoin hydantoinase A.
 
     0.640
putA
Bifunctional PutA protein [includes: proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
  
 0.609
BAV3295
AraC-family transcriptional regulator.
 
     0.608
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
   
    0.607
carB
Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.
   
    0.583
BAV3297
Putative urea amidolyase-related protein; Also similar to BAV3097 (36.8 38d).
 
     0.565
carA
Carbamoyl-phosphate synthase small chain; Start codon not provided.
   
    0.550
pyrB
Aspartate carbamoyltransferase catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
   
    0.541
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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