STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompWOuter membrane protein. (211 aa)    
Predicted Functional Partners:
hemN
Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.849
bamA
Putative surface antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
      
 0.690
piuA
Hydroxamate-type ferrisiderophore receptor.
  
   
 0.668
surA
Survival protein (peptidyl-prolyl cis-trans isomerase); Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.
      
 0.633
ompA
Previously sequenced as Bordetella avium outer membrane protein a precursor ompA SWALL:OMPA_BORAV (SWALL:Q05146) (194 aa) fasta scores: E(): 1.7e-71, 100 id in 194 aa.
      
 0.623
BAV0179
Conserved hypothetical protein.
   
    0.541
BAV2679
Conserved hypothetical protein.
   
    0.541
BAV3244
Conserved hypothetical protein.
   
    0.541
BAV3302
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.497
wlbJK
Putative membrane protein.
      
 0.468
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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