STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3304ABC transporter, ATP-binding protein. (278 aa)    
Predicted Functional Partners:
BAV3305
Putative membrane protein.
 0.998
vpsC
Putative virulence protein transporter.
 
 0.997
BAV0130
Putative membrane protein.
 
 0.987
BAV3308
Putative exported protein.
 
 
 0.955
BAV0132
Putative exported protein.
  
 0.935
BAV0131
Probable ATP-binding component of ABC transporter.
  
  
 
0.914
vacJ
Putative intercellular spreading lipoprotein.
     
 0.764
BAV3309
ABC transporter, ATP-binding protein.
    
0.751
gltB
Glutamate synthase [NADPH] large chain precursor.
       0.514
BAV3310
ABC transporter, permease protein; Start codon not provided.
       0.491
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.