STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3305Putative membrane protein. (262 aa)    
Predicted Functional Partners:
vpsC
Putative virulence protein transporter.
 
 0.998
BAV3304
ABC transporter, ATP-binding protein.
 
 0.997
BAV0131
Probable ATP-binding component of ABC transporter.
 
 0.982
BAV3308
Putative exported protein.
 
 
 0.961
BAV0132
Putative exported protein.
  
 0.937
BAV0130
Putative membrane protein.
  
  
 
0.921
vacJ
Putative intercellular spreading lipoprotein.
 
   
 0.747
BAV3310
ABC transporter, permease protein; Start codon not provided.
    
  0.571
bamA
Putative surface antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.542
BAV3118
ABC transporter, ATP-binding protein.
 
  
  0.525
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.