BAV3335 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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co-expression

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gene co-occurrence

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[Homology]

Score

BAV3335

Putative membrane protein. (458 aa)

Predicted Functional Partners:

BAV3336

0.955

BAV1835

0.743

BAV0691

0.660

BAV0476

0.603

BAV1212

0.602

BAV2125

0.582

BAV2249

0.579

BAV0495

0.570

BAV0540

0.570

BAV0829

0.544

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BAV0476	BAV0495	Putative exported protein.	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	0.624
BAV0476	BAV0540	Putative exported protein.	Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae.	0.725
BAV0476	BAV0691	Putative exported protein.	Putative membrane protein.	0.766
BAV0476	BAV1835	Putative exported protein.	Putative lipoprotein.	0.705
BAV0476	BAV3335	Putative exported protein.	Putative membrane protein.	0.603
BAV0495	BAV0476	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Putative exported protein.	0.624
BAV0495	BAV0540	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae.	0.660
BAV0495	BAV0691	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Putative membrane protein.	0.686
BAV0495	BAV1835	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Putative lipoprotein.	0.520
BAV0495	BAV3335	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	Putative membrane protein.	0.570
BAV0540	BAV0476	Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae.	Putative exported protein.	0.725
BAV0540	BAV0495	Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae.	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	0.660
BAV0540	BAV0691	Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae.	Putative membrane protein.	0.774
BAV0540	BAV1835	Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae.	Putative lipoprotein.	0.642
BAV0540	BAV3335	Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae.	Putative membrane protein.	0.570
BAV0540	BAV3336	Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae.	Conserved hypothetical protein.	0.499
BAV0691	BAV0476	Putative membrane protein.	Putative exported protein.	0.766
BAV0691	BAV0495	Putative membrane protein.	Putative exported protein; This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.	0.686
BAV0691	BAV0540	Putative membrane protein.	Putative membrane protein; No significant database matches. Seems to be unique to the Bordetellae.	0.774
BAV0691	BAV1835	Putative membrane protein.	Putative lipoprotein.	0.697