STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3340ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (576 aa)    
Predicted Functional Partners:
BAV3339
ABC transporter, permease protein.
 
 0.909
BAV3338
ABC transporter, permease protein.
 
 
 0.875
BAV2197
ABC transporter permease protein.
 
 0.731
BAV1562
ABC transporter, permease protein.
 
 0.673
BAV3337
ABC transporter, substrate-binding protein.
 
 
 0.672
BAV2540
ABC transporter, permease protein.
 
 
 0.657
BAV1848
ABC transporter, permease protein.
 
 0.626
BAV2802
ABC transporter permease protein.
 
 0.618
BAV3204
ABC transporter, permease protein.
 
 0.614
BAV2613
ABC transporter, permease protein.
 
 0.613
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.