STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemC-2Putative TonB-dependent heme receptor. (744 aa)    
Predicted Functional Partners:
BAV1572
Phage integrase (pseudogene); Unassigned protein domain.
 
 
 0.837
BAV0900
Putative adhesin; Start codon not provided.
  
 
 
 0.770
BAV0856
Adhesin.
  
     0.718
fhaB
Filamentous hemagglutinin/adhesin.
  
     0.709
BAV2850
Putative iron transport sensor protein.
 
  
 0.688
BAV2114
Hypothetical protein; Start codon not provided; No significant database matches.
  
     0.671
tonB
Siderophore-mediated iron transport protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.668
BAV1551
Putative filamentous hemagglutinin/adhesin; Similar to fhaS and fhaL of B. bronchiseptica. It is also located at the same position as B. bronchiseptica fhaS.
  
     0.625
BAV3003
Putative membrane protein; Start codon not provided.
  
 
 0.623
BAV1859
Hypothetical protein; No similarity outside the bordetellae.
  
    0.622
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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