STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV3381ABC transporter, substrate-binding protein. (349 aa)    
Predicted Functional Partners:
BAV3383
ABC transporter, permease component.
 
 0.992
BAV3382
ABC transporter, ATP-binding protein.
 
 0.991
ssuE
FMN reductase; Start codon not provided.
  
 
  0.922
idnO
Gluconate 5-dehydrogenase (short-chain dehydrogenase/reductase).
       0.752
BAV0740
ABC transporter, permease protein.
 
 
 0.728
BAV1989
ABC transporter, permease protein.
 
 
 0.712
dltD
Putative D-alanine transferase.
  
     0.696
BAV2581
ABC transporter, permease protein.
 
 
 0.688
BAV2171
Conserved hypothetical protein; Start codon not provided.
  
     0.676
BAV0739
ABC transporter, ATP-binding protein.
 
 
 0.672
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.