STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV3382ABC transporter, ATP-binding protein. (257 aa)    
Predicted Functional Partners:
BAV3383
ABC transporter, permease component.
 
 0.995
BAV3381
ABC transporter, substrate-binding protein.
 
 0.991
ssuE
FMN reductase; Start codon not provided.
  
 
 0.933
BAV1989
ABC transporter, permease protein.
 
 
 0.870
BAV2581
ABC transporter, permease protein.
 
 
 0.854
BAV0740
ABC transporter, permease protein.
 
 
 0.841
BAV1910
ABC transporter, permease protein.
 
 
 0.827
BAV0644
ABC transporter, permease protein.
 
 0.815
BAV1990
ABC transporter, substrate-binding protein.
 
 
 0.761
idnO
Gluconate 5-dehydrogenase (short-chain dehydrogenase/reductase).
       0.752
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.