STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idnOGluconate 5-dehydrogenase (short-chain dehydrogenase/reductase). (266 aa)    
Predicted Functional Partners:
BAV3383
ABC transporter, permease component.
       0.773
BAV3381
ABC transporter, substrate-binding protein.
       0.752
BAV3382
ABC transporter, ATP-binding protein.
       0.752
topB
DNA topoisomerase III.
   
 
 0.517
wlbJK
Putative membrane protein.
    
 
 0.488
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
 0.472
fabF-2
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.433
fabF
3-oxoacyl-[acyl-carrier-protein] synthase II; Start codon not provided; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.428
BAV2076
Putative short-chain dehydrogenase; Start codon not provided.
  
 
 
 0.401
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.