Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACQ69800.1KEGG: bcz:BCZK3064 hypothetical protein. (171 aa)    
Predicted Functional Partners:
ACQ69798.1
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; transcription activator effector binding; SMART: regulatory protein MerR; KEGG: pfl:PFL_5189 MerR family transcriptional regulator.
       0.773
ACQ69799.1
Hypothetical protein.
       0.773
ACQ69801.1
PFAM: CopG domain protein DNA-binding domain protein.
       0.536
ACQ71679.1
KEGG: bcr:BCAH187_A2196 hypothetical protein.
  
     0.446
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
  
    0.420
Your Current Organism:
Exiguobacterium sp. AT1b
NCBI taxonomy Id: 360911
Other names: E. sp. AT1b
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