DLAC_10543 protein (Tieghemostelium lacteum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DLAC_10543

DNA polymerase III. (583 aa)

Predicted Functional Partners:

DLAC_02026

0.823

DLAC_01023

0.716

DLAC_08156

0.664

DLAC_06723

0.664

DLAC_00085

0.611

DLAC_10510

0.602

DLAC_09495

0.589

DLAC_01120

0.562

DLAC_03097

0.534

DLAC_01011

0.533

Your Current Organism:

Tieghemostelium lacteum

NCBI taxonomy Id: 361077
Other names: Dictyostelium lacteum, T. lacteum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DLAC_00085	DLAC_01011	A0A152A8S0	A0A152A7L3	P34-cdc2 protein; Belongs to the protein kinase superfamily.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.759
DLAC_00085	DLAC_01120	A0A152A8S0	A0A152A7U9	P34-cdc2 protein; Belongs to the protein kinase superfamily.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.881
DLAC_00085	DLAC_03097	A0A152A8S0	A0A152A267	P34-cdc2 protein; Belongs to the protein kinase superfamily.	Transcription factor IIH subunit.	0.986
DLAC_00085	DLAC_06723	A0A152A8S0	A0A151ZFN1	P34-cdc2 protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.810
DLAC_00085	DLAC_08156	A0A152A8S0	A0A151ZBB0	P34-cdc2 protein; Belongs to the protein kinase superfamily.	TATA-binding protein.	0.971
DLAC_00085	DLAC_09495	A0A152A8S0	A0A151Z6I7	P34-cdc2 protein; Belongs to the protein kinase superfamily.	CDK-activating kinase assembly factor MAT1.	0.999
DLAC_00085	DLAC_10543	A0A152A8S0	A0A151Z578	P34-cdc2 protein; Belongs to the protein kinase superfamily.	DNA polymerase III.	0.611
DLAC_01011	DLAC_00085	A0A152A7L3	A0A152A8S0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	P34-cdc2 protein; Belongs to the protein kinase superfamily.	0.759
DLAC_01011	DLAC_01023	A0A152A7L3	A0A152A7I1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	SprT-like domain-containing protein.	0.618
DLAC_01011	DLAC_01120	A0A152A7L3	A0A152A7U9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
DLAC_01011	DLAC_03097	A0A152A7L3	A0A152A267	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription factor IIH subunit.	0.821
DLAC_01011	DLAC_06723	A0A152A7L3	A0A151ZFN1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.821
DLAC_01011	DLAC_08156	A0A152A7L3	A0A151ZBB0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TATA-binding protein.	0.821
DLAC_01011	DLAC_09495	A0A152A7L3	A0A151Z6I7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	CDK-activating kinase assembly factor MAT1.	0.767
DLAC_01011	DLAC_10510	A0A152A7L3	A0A151Z4R5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.998
DLAC_01011	DLAC_10543	A0A152A7L3	A0A151Z578	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA polymerase III.	0.533
DLAC_01023	DLAC_01011	A0A152A7I1	A0A152A7L3	SprT-like domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.618
DLAC_01023	DLAC_01120	A0A152A7I1	A0A152A7U9	SprT-like domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.518
DLAC_01023	DLAC_06723	A0A152A7I1	A0A151ZFN1	SprT-like domain-containing protein.	Uncharacterized protein.	0.767
DLAC_01023	DLAC_08156	A0A152A7I1	A0A151ZBB0	SprT-like domain-containing protein.	TATA-binding protein.	0.767