DLAC_00964 protein (Tieghemostelium lacteum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DLAC_00964

Myb domain-containing protein. (586 aa)

Predicted Functional Partners:

DLAC_01947

0.917

DLAC_02419

0.915

DLAC_07783

0.858

DLAC_03595

0.855

DLAC_10895

0.848

DLAC_09442

0.826

DLAC_08452

0.760

DLAC_01948

0.760

DLAC_08240

0.638

DLAC_08763

0.618

Your Current Organism:

Tieghemostelium lacteum

NCBI taxonomy Id: 361077
Other names: Dictyostelium lacteum, T. lacteum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DLAC_00964	DLAC_01947	A0A152A7E6	A0A152A548	Myb domain-containing protein.	CHC group protein.	0.917
DLAC_00964	DLAC_01948	A0A152A7E6	A0A152A550	Myb domain-containing protein.	Calcium-binding EF-hand domain-containing protein.	0.760
DLAC_00964	DLAC_02419	A0A152A7E6	A0A152A416	Myb domain-containing protein.	Actin-like protein 6A; Belongs to the actin family.	0.915
DLAC_00964	DLAC_03595	A0A152A7E6	A0A152A089	Myb domain-containing protein.	Uncharacterized protein.	0.855
DLAC_00964	DLAC_07783	A0A152A7E6	A0A151ZAF4	Myb domain-containing protein.	Uncharacterized protein.	0.858
DLAC_00964	DLAC_08240	A0A152A7E6	A0A151ZBI2	Myb domain-containing protein.	Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily.	0.638
DLAC_00964	DLAC_08452	A0A152A7E6	A0A151ZC78	Myb domain-containing protein.	PB1 domain-containing protein.	0.760
DLAC_00964	DLAC_08763	A0A152A7E6	A0A151Z895	Myb domain-containing protein.	SNF2-related domain-containing protein.	0.618
DLAC_00964	DLAC_09442	A0A152A7E6	A0A151ZA10	Myb domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.826
DLAC_00964	DLAC_10895	A0A152A7E6	A0A151Z2N3	Myb domain-containing protein.	CHE group protein.	0.848
DLAC_01947	DLAC_00964	A0A152A548	A0A152A7E6	CHC group protein.	Myb domain-containing protein.	0.917
DLAC_01947	DLAC_01948	A0A152A548	A0A152A550	CHC group protein.	Calcium-binding EF-hand domain-containing protein.	0.936
DLAC_01947	DLAC_02419	A0A152A548	A0A152A416	CHC group protein.	Actin-like protein 6A; Belongs to the actin family.	0.989
DLAC_01947	DLAC_03595	A0A152A548	A0A152A089	CHC group protein.	Uncharacterized protein.	0.972
DLAC_01947	DLAC_07783	A0A152A548	A0A151ZAF4	CHC group protein.	Uncharacterized protein.	0.969
DLAC_01947	DLAC_08452	A0A152A548	A0A151ZC78	CHC group protein.	PB1 domain-containing protein.	0.936
DLAC_01947	DLAC_08763	A0A152A548	A0A151Z895	CHC group protein.	SNF2-related domain-containing protein.	0.723
DLAC_01947	DLAC_09442	A0A152A548	A0A151ZA10	CHC group protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.938
DLAC_01947	DLAC_10895	A0A152A548	A0A151Z2N3	CHC group protein.	CHE group protein.	0.936
DLAC_01948	DLAC_00964	A0A152A550	A0A152A7E6	Calcium-binding EF-hand domain-containing protein.	Myb domain-containing protein.	0.760