Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ALE17298.1TPR repeat, SEL1 subfamily. (348 aa)    
Predicted Functional Partners:
ALE17302.1
TPR repeat.
 
     0.667
ALE17297.1
Membrane protein, putative.
       0.642
ALE16236.1
Hypothetical protein.
  
     0.615
ALE15431.1
Hypothetical protein.
  
     0.607
ALE16176.1
Hypothetical protein.
  
     0.606
ALE15418.1
Hypothetical protein; Hydrolyzes 6-aminopenicillinic acid and 7- aminocephalosporanic acid (ACA) derivatives.
  
     0.582
ALE17299.1
Hypothetical protein.
 
     0.582
ALE17660.1
Hypothetical protein.
  
     0.577
ALE16456.1
Hypothetical protein.
  
     0.572
ALE15423.1
Hypothetical protein; Hydrolyzes 6-aminopenicillinic acid and 7- aminocephalosporanic acid (ACA) derivatives.
  
     0.565
Your Current Organism:
Altererythrobacter epoxidivorans
NCBI taxonomy Id: 361183
Other names: A. epoxidivorans, Altererythrobacter epoxidivorans Kwon et al. 2007, JCM 13815, KCCM 42314, strain JCS350
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