Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALE15610.1 | ALE15972.1 | AMC99_00294 | AMC99_00665 | Prephenate dehydratase. | Chorismate mutase I. | 0.918 |
ALE15610.1 | ALE17429.1 | AMC99_00294 | AMC99_02149 | Prephenate dehydratase. | Aspartate aminotransferase. | 0.936 |
ALE15610.1 | ALE17527.1 | AMC99_00294 | AMC99_02250 | Prephenate dehydratase. | Cyclohexadienyl dehydrogenase. | 0.959 |
ALE15610.1 | ALE17638.1 | AMC99_00294 | AMC99_02363 | Prephenate dehydratase. | Phenylalanine-4-hydroxylase. | 0.905 |
ALE15610.1 | aroA | AMC99_00294 | AMC99_01419 | Prephenate dehydratase. | 5-Enolpyruvylshikimate-3-phosphate synthase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.453 |
ALE15610.1 | aroB | AMC99_00294 | AMC99_00930 | Prephenate dehydratase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.550 |
ALE15610.1 | aroC | AMC99_00294 | AMC99_00264 | Prephenate dehydratase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.551 |
ALE15610.1 | hisC | AMC99_00294 | AMC99_02248 | Prephenate dehydratase. | Homoserine O-acetyltransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.938 |
ALE15972.1 | ALE15610.1 | AMC99_00665 | AMC99_00294 | Chorismate mutase I. | Prephenate dehydratase. | 0.918 |
ALE15972.1 | ALE17429.1 | AMC99_00665 | AMC99_02149 | Chorismate mutase I. | Aspartate aminotransferase. | 0.915 |
ALE15972.1 | ALE17527.1 | AMC99_00665 | AMC99_02250 | Chorismate mutase I. | Cyclohexadienyl dehydrogenase. | 0.944 |
ALE15972.1 | aroA | AMC99_00665 | AMC99_01419 | Chorismate mutase I. | 5-Enolpyruvylshikimate-3-phosphate synthase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.626 |
ALE15972.1 | aroC | AMC99_00665 | AMC99_00264 | Chorismate mutase I. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.955 |
ALE17429.1 | ALE15610.1 | AMC99_02149 | AMC99_00294 | Aspartate aminotransferase. | Prephenate dehydratase. | 0.936 |
ALE17429.1 | ALE15972.1 | AMC99_02149 | AMC99_00665 | Aspartate aminotransferase. | Chorismate mutase I. | 0.915 |
ALE17429.1 | ALE17527.1 | AMC99_02149 | AMC99_02250 | Aspartate aminotransferase. | Cyclohexadienyl dehydrogenase. | 0.918 |
ALE17429.1 | ALE17638.1 | AMC99_02149 | AMC99_02363 | Aspartate aminotransferase. | Phenylalanine-4-hydroxylase. | 0.952 |
ALE17429.1 | hisC | AMC99_02149 | AMC99_02248 | Aspartate aminotransferase. | Homoserine O-acetyltransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.923 |
ALE17524.1 | ALE17527.1 | AMC99_02247 | AMC99_02250 | Hypothetical protein. | Cyclohexadienyl dehydrogenase. | 0.670 |
ALE17524.1 | hisC | AMC99_02247 | AMC99_02248 | Hypothetical protein. | Homoserine O-acetyltransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.625 |
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