Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALE17727.1Membrane protein, probable. (400 aa)    
Predicted Functional Partners:
ALE17728.1
Ribose operon repressor.
 
   
 0.880
ALE17726.1
Beta-glucosidase.
 
   
 0.693
ALE17725.1
Fucose /glucose /galactose permease.
 
  
 0.600
ALE17732.1
Tryptophan halogenase, putative.
 
     0.583
ALE17729.1
Tryptophan halogenase.
 
     0.581
ALE17730.1
Pass1-related protein.
 
     0.576
ALE16727.1
Putative uncharacterized protein ydbH.
  
     0.574
ALE17731.1
Peptide transport system permease protein sapC.
 
     0.520
ALE17175.1
Hypothetical protein.
  
     0.508
ALE17291.1
Hypothetical protein.
  
     0.507
Your Current Organism:
Altererythrobacter epoxidivorans
NCBI taxonomy Id: 361183
Other names: A. epoxidivorans, Altererythrobacter epoxidivorans Kwon et al. 2007, JCM 13815, KCCM 42314, strain JCS350
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