Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALE17736.1Sterol desaturase family protein. (244 aa)    
Predicted Functional Partners:
ALE17737.1
Hypothetical protein.
 
     0.855
ALE17735.1
Hypothetical protein.
       0.721
ALE17738.1
Hypothetical protein.
  
    0.643
ALE17734.1
Hypothetical protein.
       0.619
ALE15692.1
Lycopene cyclase.
 
   
 0.614
ALE15689.1
Phytoene synthase.
 
 
 0.544
ALE17739.1
Hypothetical protein.
       0.490
ALE17741.1
Hypothetical protein.
 
     0.455
ALE16500.1
Hypothetical protein.
  
 
 0.423
Your Current Organism:
Altererythrobacter epoxidivorans
NCBI taxonomy Id: 361183
Other names: A. epoxidivorans, Altererythrobacter epoxidivorans Kwon et al. 2007, JCM 13815, KCCM 42314, strain JCS350
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