Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALE17742.127kDa outer membrane protein. (230 aa)    
Predicted Functional Partners:
ALE17741.1
Hypothetical protein.
 
  
 0.844
ALE17743.1
Hypothetical protein.
       0.773
ALE17739.1
Hypothetical protein.
       0.668
ALE17740.1
Carboxylesterase family protein.
       0.651
ALE17866.1
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation.
 
 
 0.629
ALE17738.1
Hypothetical protein.
       0.576
ALE16123.1
Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase.
  
 
 0.541
ALE17735.1
Hypothetical protein.
 
     0.414
rpoH
RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
 
   
 0.402
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.402
Your Current Organism:
Altererythrobacter epoxidivorans
NCBI taxonomy Id: 361183
Other names: A. epoxidivorans, Altererythrobacter epoxidivorans Kwon et al. 2007, JCM 13815, KCCM 42314, strain JCS350
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