STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC34445.1Uncharacterized membrane protein YcaP, DUF421 family. (240 aa)    
Predicted Functional Partners:
SDC18790.1
Sporulation protein YunB.
  
     0.633
SDD65019.1
Spore germination protein KA.
 
    0.572
SDC34411.1
Hypothetical protein.
       0.502
SDC67469.1
Sporulation integral membrane protein YlbJ.
  
     0.488
SDC49381.1
Spore germination protein KA.
 
    0.487
SDD38865.1
Sporulation protein YtfJ.
  
     0.476
SDC66485.1
RNA polymerase sporulation-specific sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.447
SDD67358.1
AbrB family transcriptional regulator, stage V sporulation protein T.
  
     0.438
SDD45801.1
Stage V sporulation protein AC.
 
    0.431
SDC66454.1
RNA polymerase sporulation-specific sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.426
Your Current Organism:
Terribacillus halophilus
NCBI taxonomy Id: 361279
Other names: Bacillus sp. 002-051, DSM 21620, IAM 15310, JCM 21760, KCTC 13937, T. halophilus, Terribacillus halophilus An et al. 2007, strain 002-051
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