STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC49349.1Spore germination protein (amino acid permease). (363 aa)    
Predicted Functional Partners:
SDC49308.1
Germination protein, Ger(x)C family.
 
  
 0.951
SDC49381.1
Spore germination protein KA.
 
  
 0.940
SDC49270.1
Hypothetical protein.
       0.773
SDD08807.1
Acetoin utilization transport system permease protein.
  
     0.596
SDC49662.1
Spore germination protein.
  
     0.558
SDD45907.1
Stage V sporulation protein AE.
  
     0.510
SDC60245.1
Spore germination protein.
 
  
 0.502
SDD65080.1
Germination protein, Ger(x)C family.
 
  
 0.493
SDC49420.1
N-acetylmuramoyl-L-alanine amidase.
       0.490
SDD33677.1
Uncharacterized conserved protein, DUF2164 family.
  
     0.482
Your Current Organism:
Terribacillus halophilus
NCBI taxonomy Id: 361279
Other names: Bacillus sp. 002-051, DSM 21620, IAM 15310, JCM 21760, KCTC 13937, T. halophilus, Terribacillus halophilus An et al. 2007, strain 002-051
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.