Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDC03305.1 | SDC04519.1 | SAMN05421663_101207 | SAMN05421663_101243 | Stage II sporulation protein R. | Transcriptional regulator. | 0.829 |
SDC03305.1 | SDC66518.1 | SAMN05421663_101207 | SAMN05421663_103286 | Stage II sporulation protein R. | Stage II sporulation protein GA (sporulation sigma-E factor processing peptidase); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. | 0.844 |
SDC03305.1 | SDC67469.1 | SAMN05421663_101207 | SAMN05421663_103313 | Stage II sporulation protein R. | Sporulation integral membrane protein YlbJ. | 0.809 |
SDC03305.1 | SDD19255.1 | SAMN05421663_101207 | SAMN05421663_107208 | Stage II sporulation protein R. | Sporulation protein YqfC. | 0.724 |
SDC03305.1 | SDD19285.1 | SAMN05421663_101207 | SAMN05421663_107209 | Stage II sporulation protein R. | Similar to stage IV sporulation protein. | 0.804 |
SDC03305.1 | SDD38865.1 | SAMN05421663_101207 | SAMN05421663_11029 | Stage II sporulation protein R. | Sporulation protein YtfJ. | 0.759 |
SDC03305.1 | SDD45318.1 | SAMN05421663_101207 | SAMN05421663_11128 | Stage II sporulation protein R. | Stage II sporulation protein M; Required for complete septum migration and engulfment of the forespore compartment during sporulation. Required for stabilizing and recruiting of SpoIIP to the septal membrane. | 0.734 |
SDC03305.1 | SDD54489.1 | SAMN05421663_101207 | SAMN05421663_11340 | Stage II sporulation protein R. | Stage III sporulation protein AE. | 0.797 |
SDC03305.1 | SDD67558.1 | SAMN05421663_101207 | SAMN05421663_11744 | Stage II sporulation protein R. | Sporulation protein YabP. | 0.810 |
SDC03305.1 | gpr | SAMN05421663_101207 | SAMN05421663_107190 | Stage II sporulation protein R. | Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family. | 0.774 |
SDC04519.1 | SDC03305.1 | SAMN05421663_101243 | SAMN05421663_101207 | Transcriptional regulator. | Stage II sporulation protein R. | 0.829 |
SDC04519.1 | SDC66518.1 | SAMN05421663_101243 | SAMN05421663_103286 | Transcriptional regulator. | Stage II sporulation protein GA (sporulation sigma-E factor processing peptidase); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. | 0.652 |
SDC04519.1 | SDC67469.1 | SAMN05421663_101243 | SAMN05421663_103313 | Transcriptional regulator. | Sporulation integral membrane protein YlbJ. | 0.803 |
SDC04519.1 | SDD19255.1 | SAMN05421663_101243 | SAMN05421663_107208 | Transcriptional regulator. | Sporulation protein YqfC. | 0.553 |
SDC04519.1 | SDD19285.1 | SAMN05421663_101243 | SAMN05421663_107209 | Transcriptional regulator. | Similar to stage IV sporulation protein. | 0.798 |
SDC04519.1 | SDD38865.1 | SAMN05421663_101243 | SAMN05421663_11029 | Transcriptional regulator. | Sporulation protein YtfJ. | 0.756 |
SDC04519.1 | SDD45318.1 | SAMN05421663_101243 | SAMN05421663_11128 | Transcriptional regulator. | Stage II sporulation protein M; Required for complete septum migration and engulfment of the forespore compartment during sporulation. Required for stabilizing and recruiting of SpoIIP to the septal membrane. | 0.459 |
SDC04519.1 | SDD54489.1 | SAMN05421663_101243 | SAMN05421663_11340 | Transcriptional regulator. | Stage III sporulation protein AE. | 0.930 |
SDC04519.1 | SDD67558.1 | SAMN05421663_101243 | SAMN05421663_11744 | Transcriptional regulator. | Sporulation protein YabP. | 0.810 |
SDC04519.1 | gpr | SAMN05421663_101243 | SAMN05421663_107190 | Transcriptional regulator. | Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family. | 0.773 |
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