STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaAL-rhamnose isomerase; Belongs to the rhamnose isomerase family. (417 aa)    
Predicted Functional Partners:
SDD55243.1
Rhamnulokinase.
 
 0.994
SDD55281.1
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
 
 
 0.994
SDD55213.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
   
 0.863
SDD55182.1
MFS transporter, SP family, inositol transporter.
 
    0.804
SDC08856.1
Gluconokinase; Belongs to the FGGY kinase family.
  
 
 0.777
xylB
Xylulokinase.
  
 
 0.777
SDC65512.1
Sugar (pentulose or hexulose) kinase.
  
 
 0.749
SDD55627.1
alpha-L-rhamnosidase.
 
  
 0.643
SDD55433.1
Rhamnose transport system substrate-binding protein.
 
     0.630
SDD55357.1
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family.
  
    0.618
Your Current Organism:
Terribacillus halophilus
NCBI taxonomy Id: 361279
Other names: Bacillus sp. 002-051, DSM 21620, IAM 15310, JCM 21760, KCTC 13937, T. halophilus, Terribacillus halophilus An et al. 2007, strain 002-051
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