Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
AJF63511.1NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)    
Predicted Functional Partners:
AJF68376.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.557
AJF63510.1
ACP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.552
gvpA
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
       0.540
AJF63697.1
Gas vesicle protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.540
AJF63698.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.540
AJF63701.1
Gas vesicle protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.540
AJF63702.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.540
AJF69517.1
Gas vesicle protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.540
AJF69552.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.540
AJF69516.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.539
Your Current Organism:
Streptomyces vietnamensis
NCBI taxonomy Id: 362257
Other names: CCTCC M 205143, CCTCC:M:205143, IAM 15340, JCM 21785, S. vietnamensis, Streptomyces vietnamensis Zhu et al. 2007, strain GIMV4.0001
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